>QHD43416.1_SARS-CoV-2 -----------------MF-VFLVLL-----PLVSSQCVNLTTRTQLP-PA-----YTN- ------SFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHA----IHVSGT---NGT- KRFDNPVLPFNDGVYFASTEK-------------S----NIIRGWIFGTTLDSKTQS--- ------LLIVNN-------------ATNVVIKV-CEFQFCNDPF----LGVYYHKNN--- KSWMESEFRV-----YSSANNCTFEYVSQPFLMDLE-GKQGNF--KNLRE--FVFKNIDG YFKIYSKHTPINLVR----DLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSS SGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQT SNFRVQPTESIV-RFPNITNLCPFGEVFNAT--RFASVYAWNRKRISNCVADYSVLYNS- ASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTG CVIAWNSNNLDSKVGGNY-NYLYRL-----------FRKSNLKPFER------DISTEIY QAG----STPCNGVEGFNCYFPL-----------QSYGFQPTNGVGYQPY-R----VVVL SFELLHAPATVCGPKK-----STNLVKNKCVNFNFNGLTGTGVLTESNKKFLP-FQQFGR DIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHAD QLTPTWRVY---ST--GSNVFQTRAGCLIGAEHV--NNSYECDIPIGAGICASYQTQTNS PRR-ARSVASQ-----SIIAYT--MSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMT KTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTP ---PIKDFGGFNFSQILPDPS----KPSKRSFIEDLLFNKVTLADAGFIKQYGDCLG--- DIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAIC HDG---KAHFPREGVFVSN--G-------THWFVTQRNFYEPQIITTDNTFVSGNCDVVI GIVNNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDVDLGDISGINASVVNIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSC LKGCCSCGSCCKFDED-DSEPVLKGVKLHYT--- >ASO66810.1_16BO133 ------------MFIVFLI-SYTTFL-----IPYTATTTCFSGPTTEN-KL-----NIS- ------SGSRGVYYPDDIFRSNVSVLVTGRFLRFNTTLTWYNS----WN----------- QAYSSPVLPFGHGVYFSTIDK-------------S----NVVRGWIFGTTLDNTTQS--- ------ALLVNN-------------GSAITIEV-CYFQFCDNPA----FIISGG-A---- ----QTNTAI-----YINLRNCTYVDTLRDLPLSFA-EVDGGF--KHLRE--FVFKNSDG FLHIYGAYQPHDLDIGAPAALPAQFLPLKPLWKLPLGLNITNYKVVTTLKPT-------- --NQAFQAAYIVGNLKHTTMMLSFNENGTMSNAIDCSQDPLAELKCTLKQFDVGKGIYQT SNFRVQPTVDVA-RFPNITNVCPFDKVFNAT--RFPSVYAWERTKISDCVADYTVFYNS- TSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFSEVRQVAPGQTGVIADYNYKLPDDFIG CVIAWNTAKQDV-----G-SYFYRS-----------HRSSKLKPFER------DLSSE-E -----------------NGVLTL-----------STYDFNQNVPLEYQAT-R----VVVL SFELLNAPATVCGPKL-----STPLVKNQCVNFNFNGLKGTGVLTDSSKTFQS-FQQFGR DASDFTDSVRDPQTLQILDISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTIHAD HLTHSWRVY---TT--GPHVFQTQAGCLIGAEHV--NVSYQCDIPIGAGICASYHTAS-- --L-LRSTGQK-----SIVAYT--MSLGAENSVAYANNSIAIPTNFSISVTTEVMPVSMA KTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQDKNTQEVFAQVKQMYKTP ---TIRDFGGFNFSQILPDPL----KPTKRSFIEDLLYNKVTLADAGFMKQYADCLG--- GINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKQIANQFNKAITQIQESLTTTATALGKLQDVVNQNAQALNTL VKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAIC HEG---KAYFPREGVFVSN--G-------SSWFITQRNFYSPQIITTDNTFVAGSCDVVI GIINNTVYDPL-Q-PELDSFKQELDKYFKNH-----TSPDVDLGDISGINASVVDIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLVGLFMAIILLCYFTSCCSC CKGMCSCGSCCRFDED-DSEPVLKGVKLHYT--- >ACU31032.1_Rs672 ------------MKV-LIV-LLCLGL-----VTAQDGCGHISTKPQPL-MD-----KFS- ------SSRRGVYYNDDIFRSDVLHLTQDYFLPFDTNLTRYLS----FNMDS----ATK- VYFDNPTLPFGDGIYFAATEK-------------S----NVVRGWIFGSTMDNTTQS--- ------AIIVNN-------------STHIIIRV-CYFNLCKEPM----YAISNE-Q---- ----HYKSWV-----YQNAYNCTYDRVEQSFQLDTA-PQTGNF--KDLRE--YVFKNKDG FLSVYNAYSPIDIPR----GLPVGFSVLKPILKLPISINITSFKVVMSMFSR------TT SNFLPEVAAYFVGNLKYSTFMLNFNENGTITDAIDCAQNPLSELKCTIKNFNVSKGIYQT SNFRVSPTHEVI-RFPNITNRCPFDKVFNAS--RFPNVYAWERTKISDCVADYTVLYNS- TSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTG CVIAWNTAKQDQ-----G-QYYYRS-----------SRKTKLKPFER------DLTSD-E -----------------NGVRTL-----------STYDFYPNVPIEYQAT-R----VVVL SFELLNAPATVCGPKL-----STGLVKNQCVNFNFNGLKGTGVLTDSSKRFQS-FQQFGR DTSDFTDSVRDPQTLQILDITPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRAD QLTPAWRVY---ST--GVNVFQTQAGCLIGAEHV--NASYECDIPIGAGICASYHTAS-- --T-LRSVGQK-----SIVAYT--MSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMA KTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALTGVALEQDKNTQEVFAQVKQMYKTP ---AIKDFGGFNFSQILPDPS----KPTKRSFIEDLLFNKVTLADAGFMKQYGECLG--- DISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVPGQSKRVDFCGRGYHLMSFPQAAPHGVVFLHVTYVPSQEKNFTTAPAIC HEG---KAYFPREGVFVSN--G-------TSWFITQRNFYSPQIITTDNTFVAGNCDVVI GIINNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDVDLGDISGINASVVNIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMATILLCCMTSCCSC LKGACSCGSCCKFDED-DSEPVLKGVKLHYT--- >AY613950.1_PC4-227 ------------MFIFLLF-LTL-TS-----GSDLDRCTTFDDVQAPN-YT-----QHT- ------SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHT----IN----------- HTFDNPVIPFKDGIYFAATEK-------------S----NVVRGWVFGSTMNNKSQS--- ------VIIINN-------------STNVVIRA-CNFELCDNPF----FVVSKPMGT--- ----RTHTMI-----FDNAFNCTFEYISDAFSLDVS-EKSGNF--KHLRE--FVFKNKDG FLYVYKGYQPIDVVR----DLPSGFNTLKPIFKLPLGINITNFRAILTAFSP------AQ DTWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQT SNFRVVPSGDVV-RFPNITNLCPFGEVFNAT--KFPSVYAWERKRISNCVADYSVLYNS- TSFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMG CVLAWNTRNIDATSTGNY-NYKYRY-----------LRHGKLRPFER------DISNVPF SPD----GKPCTPP-APNCYWPL-----------NGYGFYTTSGIGYQPY-R----VVVL SFELLNAPATVCGPKL-----STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP-FQQFGR DVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTLIHAE QLTPAWRIY---ST--GNNVFQTQAGCLIGAEHV--DTSYECDIPIGAGICASYHTVS-- --S-LRSTSQK-----SIVAYT--MSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMA KTSVDCNMYICGDSTECANLLLQYGSFCRQLNRALSGIAAEQDRNTREVFVQVKQMYKTP ---TLKDFGGFNFSQILPDPL----KPTKRSFIEDLLFNKVTLADAGFMKQYGECLG--- DINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAIC HEG---KAYFPREGVFVFN--G-------TSWFITQRNFFSPQIITTDNTFVSGNCDVVI GIINNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDVDLGDISGINASVVNIQEEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSC LKGACSCGSCCKFDED-DSEPVLKGVKLHYT--- >AAP41037.1_SARS-CoV ------------MFIFLLF-LTL-TS-----GSDLDRCTTFDDVQAPN-YT-----QHT- ------SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHT----IN----------- HTFGNPVIPFKDGIYFAATEK-------------S----NVVRGWVFGSTMNNKSQS--- ------VIIINN-------------STNVVIRA-CNFELCDNPF----FAVSKPMGT--- ----QTHTMI-----FDNAFNCTFEYISDAFSLDVS-EKSGNF--KHLRE--FVFKNKDG FLYVYKGYQPIDVVR----DLPSGFNTLKPIFKLPLGINITNFRAILTAFSP------AQ DIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQT SNFRVVPSGDVV-RFPNITNLCPFGEVFNAT--KFPSVYAWERKKISNCVADYSVLYNS- TFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMG CVLAWNTRNIDATSTGNY-NYKYRY-----------LRHGKLRPFER------DISNVPF SPD----GKPCTPP-ALNCYWPL-----------NDYGFYTTTGIGYQPY-R----VVVL SFELLNAPATVCGPKL-----STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP-FQQFGR DVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHAD QLTPAWRIY---ST--GNNVFQTQAGCLIGAEHV--DTSYECDIPIGAGICASYHTVS-- --L-LRSTSQK-----SIVAYT--MSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMA KTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTP ---TLKYFGGFNFSQILPDPL----KPTKRSFIEDLLFNKVTLADAGFMKQYGECLG--- DINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAIC HEG---KAYFPREGVFVFN--G-------TSWFITQRNFFSPQIITTDNTFVSGNCDVVI GIINNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDVDLGDISGINASVVNIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSC LKGACSCGSCCKFDED-DSEPVLKGVKLHYT--- >AY351680.1_ZMY1 ------------MFIFLLF-LTL-TS-----GSDLDRCITFDDVQAPN-YT-----QHT- ------SSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHT----IN----------- HTFGNPVIPFKDGIYFAATEK-------------S----NVVRGWVFGSTMNNKSQS--- ------VIIINN-------------STNVVIRA-CNFELCDNPF----FAVSKPMGT--- ----QTHTMI-----FDNAFNCTFEYISDAFSLDVS-EKSGNF--KHLRE--FVFKNKDG FLYVYKGYQPIDVVR----DLPSGFNTLKPIFKLPLGINITNFRAILTAFSP------AQ DIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQT SNFRVVPSGDVV-RFPNITNLCPFGEVFNAT--KFPSVYAWERKEISNCVADYSVLYNS- TFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMG CVLAWNTRNIDATSTGNY-NYKYRY-----------LRHGKLRPFER------DISNVPF SPD----GKPCTPP-ALNCYWPL-----------NDYGFYTTTGIGYQPY-R----VVVL SFELLNAPATVCGPKL-----STDLIKNQCVNFNFNGLTGTGVLTPSSKRFQP-FQQFGR DVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHAD QLTPAWRIY---ST--GNNVFQTQAGCLIGAEHV--DTSYECDIPIGAGICASYHTVS-- --L-LRSTSQK-----SIVAYT--MSLGAVSSIAYSNNTIAIPTNFSISITTEVMPVSMA KTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTP ---TLKYFGGFNFSQILPDPL----KPTKRSFIEDLLFNKVTLADAGFMKQYGECLG--- DINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAKQM AYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKAEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLATTKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAIC HEG---KAYFPREGVFVFN--G-------TPWFITQRNFFSPQIITTDNTFVSGSCDVVI GIINNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDVDLGDISGINASVVNIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSC LKGACSCGSCCKFDED-DSEPVLKGVKLHYT--- >AIA62300.1_BtRf-SX2013 ------------MKI-LIF-AFLVTL-----VKAQEGCGVINLKTQPT-LT-----QVS- ------SSRRGVYYNDDIFRSDVLHLTQDYFLPFHSNLTQYFS----LNIES----D--- IYFDNPILKFGDGVYFAATEK-------------S----NVIRGWVFGSTFDNTTQS--- ------AIIVNN-------------STHIIIRV-CYFNLCKDPM----YTVSAG-T---- ----QVSSWV-----YQSAFNCTYDRVEKSFQLDTS-PKTGNF--TDLRE--FVFKNRDG FFTVYQTYTPVNLLR----GLPSGLSVLKPILKLPFGINITSFRVVMAMFSK------TT SNYVPESAAYYVGNLKQSTFMLSFNQNGTIVDAVDCSQDPLAELKCTTKSFNVSKGIYQT SNFRVSPVTEVV-RFPNITNLCPFDKVFNAT--RFPSVYAWERTKISDCVADYTVFYNS- TSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFSEVRQVAPGQTGVIADYNYKLPDDFTG CVIAWNTAKQDV-----G-SYFYRS-----------HRSSKLKPFER------DLSSE-E -----------------NGVRTL-----------STYDFNQYVPLEYQAT-R----VVVL SFELLNAPATVCGPKL-----STSLVKNQCVNFNFNGFKGTGVLTDSSKTFQS-FQQFGR DASDFTDSVRDPQTLRILDISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPTTLHAD QLAPSWRVY---TT--GPYVFQTQAGCLIGAEHV--NASYQCDIPIGAGICASYHTAS-- --L-LRSTGQK-----SIVAYT--MSLGAENSVAYANNSIAIPTNFSISVTTEVMPVSMA KTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQDKNTQEVFAQVKQMYKTP ---TIRDFGGFNFSQILPDPL----KPTKRSFIEDLLYNKVTLADAGFMKQYADCLG--- GINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKQIANQFNKAITQIQESLTTTSTALGKLQDVVNQNAQALNTL VKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRTSA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQERNFTTAPAIC HEG---KAYFPREGVFVSN--G-------SSWFITQRNFYSPQIITTDNTFVAGSCDVVI GIINNTVYDPL-Q-PELDSFKQELDKYFKNH-----TSPDVDFGDISGINASVVDIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLVGLFMAIILLCYFTSCCSC CKGMCSCGSCCRFDED-DSEPVLKGVKLHYT--- >ABD75323.1_Rf1 ------------MKI-LIF-AFLVTL-----VKAQEGCGVINLRTQPK-LT-----QVS- ------SSRRGVYYNDDIFRSDVLHLTQDYFLPFHSNLTQYFS----LNIES----DKI- VYFDNPILKFGDGVYFAATEK-------------S----NVIRGWVFGSTFDNTTQS--- ------AIIVNN-------------STHIIIRV-CYFNLCKDPM----YTVSAG-T---- ----QKSSWV-----YQSAFNCTYDRVEKSFQLDTS-PKTGNF--TDLRE--FVFKNRDG FFTAYQTYTPVNLLR----GLPSGLSVLKPILKLPFGINITSFRVVMAMFSK------TT SNYVPESAAYYVGNLKQSTFMLSFNQNGTIVDAVDCSQDPLAELKCTTKSFNVSKGIYQT SNFRVSPVTEVV-RFPNITNLCPFDKVFNAT--RFPSVYAWERTKISDCVADYTVFYNS- TSFSTFNCYGVSPSKLIDLCFTSVYADTFLIRFSEVRQVAPGQTGVIADYNYKLPDDFTG CVIAWNTAKQDV-----G-SYFYRS-----------HRSSKLKPFER------DLSSE-E -----------------NGVRTL-----------STYDFNQNVPLEYQAT-R----VVVL SFELLNAPATVCGPKL-----STSLVKNQCVNFNFNGFKGTGVLTDSSKTFQS-FQQFGR DASDFTDSVRDPQTLRILDISPCSFGGVSVITPGTNTSSAVAVLYQDVNCTDVPRTIQAD QLAPSWRVY---TT--GPYVFQTQAGCLIGAEHV--NASYQCDIPIGAGICASYHTAS-- --H-LRSTGQK-----SIVAYT--MSLGAENSVAYANNSIAIPTNFSISVTTEVMPVSMA KTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALSGIAVEQDKNTQEVFAQVKQMYKTP ---TIRDFGGFNFSQILPDPL----KPTKRSFIEDLLYNKVTLADAGFMKQYADCLG--- GINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALISGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKQIANQFNKAITQIQESLTTTSTALGKLQDVVNQNAQALNTL VKQLSSNFGAISSALNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPAIC HEG---KAYFPREGVFVSN--G-------SSWFITQRNFYSPQIITTDNTFVAGSCDVVI GIINNTVYDPL-Q-PELDSFKQELDKYFKNH-----TSPDVDLGDISGINASVVDIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLVGLFMAIILLCYFTSCCSC CKGMCSCGSCCRFDED-DSEPVLKGVKLHYT--- >AID16716.1_Longquan-140 ------------MKI-LIL-AFLANL-----AKAQEGCGIISRKPQPK-MA-----QVS- ------SSRRGVYYNDDIFRSDVLHLTQDYFLPFDSNLTQYFS----LNVDS----DRY- TYFDNPILDFGDGVYFAATEK-------------S----NVIRGWIFGSSFDNTTQS--- ------AVIVNN-------------STHIIIRV-CNFNLCREPM----YTVSRG-T---- ----QQNSWV-----YQSAFNCTYDRVEKSFQLDTT-PKTGNF--KDLRE--YVFKNRDG FLSVYQTYTAVNLPR----GLPEGFSVLRPILKLPFGINITSYRVVMAMFSQ------FT SNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELKCTIKNFNVDKGIYQT SNFRVSPTQEVI-RFPNITNRCPFDKVFNVT--RFPNVYAWERTKISDCVADYTVLYNS- TSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTG CVIAWNTAKQDI-----G-NYYYRS-----------HRKTKLKPFER------DLSSDDG -----------------NGVYTL-----------STYDFNPNVPVAYQAT-R----VVVL SFELLNAPATVCGPKL-----STQLVKNQCVNFNFNGLKGTGVLTSSSKRFQS-FQQFGR DTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRAD QLTPAWRVY---ST--GINVFQTQAGCLIGAEHV--NASYECDIPIGAGICASYHTAS-- --V-LRSTGQK-----SIVAYT--MSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMA KTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTP ---AIKDFGGFNFSQILPDPS----KPTKRSFIEDLLFNKVTLADAGFMKQYGECLG--- DVSARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPAIC HEG---KAYFPREGVFVSN--G-------TSWFITQRNFYSPQLITTDNTFVSGNCDVVI GIINNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDVDLGDISGINASVVNIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSC LKGACSCGSCCKFDED-DSEPVLKGVKLHYT--- >ADE34812.1_HKU3-12 ------------MKI-LIF-AFLANL-----AKAQEGCGIISRKPQPK-MA-----QVS- ------SSRRGVYYNDDIFRSDVLHLTQDYFLPFDSNLTQYFS----LNVDS----DRY- TYFDNPILDFGDGVYFAATEK-------------S----NVIRGWIFGSSFDNTTQS--- ------AVIVNN-------------STHIIIRV-CNFNLCKEPM----YTVSRG-T---- ----QQNAWV-----YQSAFNCTYDRVEKSFQLDTT-PKTGNF--KDLRE--YVFKNRDG FLSVYQTYTAVNLPR----GLPTGFSVLKPILKLPFGINITSYRVVMAMFSQ------TT SNFLPESAAYYVGNLKYSTFMLRFNENGTITDAVDCSQNPLAELKCTIKNFNVDKGIYQT SNFRVSPTQEVI-RFPNITNRCPFDKVFNAT--RFPNVYAWERTKISDCVADYTVLYNS- TSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTG CVIAWNTAKHDT-----G-NYYYRS-----------HRKTKLKPFER------DLSSDDG -----------------NGVYTL-----------STYDFNPNVPVAYQAT-R----VVVL SFELLNAPATVCGPKL-----STELVKNQCVNFNFNGLKGTGVLTSSSKRFQS-FQQFGR DTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRAD QLTPAWRVY---ST--GVNVFQTQAGCLIGAEHV--NASYECDIPIGAGICASYHTAS-- --V-LRSTGQK-----SIVAYT--MSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMA KTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTP ---AIKDFGGFNFSQILPDPS----KPTKRSFIEDLLFNKVTLADAGFMKQYGECLG--- DVSARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLSSTASALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPSQEKNFTTAPAIC HEG---KAYFPREGVFVSN--G-------TSWFITQRNFYSPQLITTDNTFVSGNCDVVI GIINNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDVDLGDISGINASVVNIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSC LKGACSCGSCCKFDED-DSEPVLKGVKLHYT--- >ABD75332.1_Rm1 ------------MKV-LIF-ALLFSL-----AKAQEGCGIISRKPQPK-ME-----KVS- ------SSRRGVYYNDDIFRSDVLHLTQDYFLPFDSNLTQYFS----LNIDS----NKY- TYFDNPILDFGDGVYFAATEK-------------S----NVIRGWIFGSSFDNTTQS--- ------AIIVNN-------------STHIIIRV-CNFNLCKEPM----YTVSKG-T---- ----QQSSWV-----YQSAFNCTYDRVEKSFQLDTA-PKTGNF--KDLRE--YVFKNKGG FLRVYQTYTAVNLPR----GFPAGFSVLRPILKLPFGINITSYRVVMTMFSQ------FN SNFLPESAAYYVGNLKYTTFMLSFNENGTITDAVDCSQNPLAELKCTIKNFNVSKGIYQT SNFRVTPTQEVV-RFPNITNRCPFDKVFNAS--RFPNVYAWERTKISDCVADYTVLYNS- TSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRSSEVRQVAPGETGVIADYNYKLPDDFTG CVIAWNTAQQDQ-----G-QYYYRS-----------YRKEKLKPFER------DLSSD-E -----------------NGVYTL-----------STYDFYPSIPVEYQAT-R----VVVL SFELLNAPATVCGPKL-----STQLVKNQCVNFNFNGLRGTGVLTTSSKRFQS-FQQFGR DTSDFTDSVRDPQTLEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTSIHAD QLTPAWRVY---ST--GVNVFQTQAGCLIGAEHV--NASYECDIPIGAGICASYHTAS-- --V-LRSTGQK-----SIVAYT--MSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSIA KTSVDCTMYICGDSLECSNLLLQYGSFCTQLNRALTGIAIEQDKNTQEVFAQVKQMYKTP ---AIKDFGGFNFSQILPDPS----KPTKRSFIEDLLFNKVTLADAGFMKQYGECLG--- DISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGSALQIPFAMQM AYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAIC HEG---KAYFPREGVFVSN--G-------TSWFITQRNFYSPQIITTDNTFVAGNCDVVI GIINNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDVDLGDISGINASVVNIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSC LKGACSCGSCCKFDED-DSEPVLKGVKLHYT--- >AGC74176.1_Cp/Yunnan2011 ------------MKI-FLF-SLLFSA-----ALAQEGCGLLSFKPQPK-LA-----QFS- ------SSKRGVYYNDDIFRSDVLHLTQDYFLPFHSNLTQYFS----LNVDS----DRQ- VYFDNPTLNFGDGVYFAATEK-------------S----NVIRGWIFGSTMDNSTQS--- ------AIIVNN-------------STHIIIRV-CNFNLCKEPM----FTVSRG-V---- ----HFSSWV-----YQSAFNCTYDRVEKSFQLDTA-PKTGNF--KDLRE--YVFKNRDG FLSVYHSYTPVDIIR----GIPVGFSVLKPILKLPIGINITSFKVVMTMYSQ------TT SNFLSESAAYYVGNLKYVTFMFQFNENGTIADAVDCSQNPLAELKCTLKNFNVSKGIYQT SNFRVSPSTEVI-RFPNITNRCPFDRVFNAS--RFPSVYAWERTKISDCVADYTVLYNS- TSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFSEVRQIAPGETGVIADYNYKLPDEFTG CVIAWNTANQDR-----G-QYYYRS-----------SRKTKLKPFER------DLSSD-E -----------------NGVRTL-----------STYDFYPSVPLEYQAT-R----VVVL SFELLNAPATVCGPKL-----STSLIKNQCVNFNFNGLKGTGVLTDSSKKFQS-FQQFGR DASDFTDSVRDPQTLQILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVPTAIRAD QLTPAWRVY---SA--GVNVFQTQAGCLIGAEHV--NASYECDIPIGAGICASYHTAS-- --L-LRNTGQK-----SIVAYT--MSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMA KTSVDCTMYICGDSQECSNLLLQYGSFCTQLNRALSGIAVEQDKNTQEVFAQVKQMYKTP ---AIKDFGGFNFSQILPDPS----KPTKRSFIEDLLFNKVTLADAGFMKQYGECLG--- DISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAIC HQG---KAYFPREGVFVSN--G-------TSWFITQRNFFSPQIITTDNTFVSGNCDVVI GIINNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDVDLGDISGINASVVNIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMATILLCCMTSCCSC LKGACSCGSCCKFDED-DSEPVLKGVKLHYT--- >AVP78042.1_bat-SL-CoVZXC21 ---------------MLFF-LFL-QF-----ALVNSQC-DLTGRTPLN-PN-----YTN- ------SSQRGVYYPDTIYRSDTLVLSQGYFLPFYSNVSWYYS----LTTNN----AAT- KRTDNPILDFKDGIYFAATEH-------------S----NIVRGWIFGTTLDNTSQS--- ------LLIVNN-------------ATNVIIKV-CNFDFCYDPY----LSGYYH-NN--- KTWSIREFAV-----YSFYANCTFEYVSKSFMLNIS-GNGGLF--NTLRE--FVFRNVDG HFKIYSKFTPVNLNR----GLPTGLSVLQPLVELPVSINITKFRTLLTIHRGD---PMSN NGWTAFSAAYFVGYLKPRTFMLKYNENGTITDAVDCALDPLSETKCTLKSLSVQKGIYQT SNFRVQPTQSIV-RFPNITNVCPFHKVFNAT--RFPSVYAWERTKISDCIADYTVFYNS- TSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFSEVRQVAPGQTGVIADYNYKLPDDFTG CVIAWNTAKQDT-----G-HYFYRS-----------HRSTKLKPFER------DLSSD-E -----------------NGVRTL-----------STYDFNPNVPLEYQAT-R----VVVL SFELLNAPATVCGPKL-----STQLVKNQCVNFNFNGLKGTGVLTDSSKRFQS-FQQFGK DASDFIDSVRDPQTLEILDITPCSFGGVSVITPGTNTSSEVAVLYQDVNCTDVPTTIHAD QLTPAWRIY---AI--GTSVFQTQAGCLIGAEHV--NASYECDIPIGAGICASYHTAS-- --I-LRSTGQK-----AIVAYT--MSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMA KTSVDCTMYICGDSIECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQIYKTP ---PIKDFGGFNFSQILPDPS----KPSKRSFIEDLLFNKVTLADAGFIKQYGDCLG--- DISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALISGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLTSTASALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYIPSQEKNFTTAPAIC HEG---KAHFPREGVFVSN--G-------THWFVTQRNFYEPQIITTDNTFVSGNCDVVI GIINNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDIDLGDISGINASVVNIQKEI DRLNEVARNLNESLIDLQELGKYEHYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSC LKGCCSCGFCCKFDED-DSEPVLKGVKLHYT--- >AVP78031.1_bat-SL-CoVZC45 ---------------MLFF-LFL-QF-----ALVNSQCVNLTGRTPLN-PN-----YTN- ------SSQRGVYYPDTIYRSDTLVLSQGYFLPFYSNVSWYYS----LTTNN----AAT- KRTDNPILDFKDGIYFAATEH-------------S----NIIRGWIFGTTLDNTSQS--- ------LLIVNN-------------ATNVIIKV-CNFDFCYDPY----LSGYYH-NN--- KTWSIREFAV-----YSSYANCTFEYVSKSFMLNIS-GNGGLF--NTLRE--FVFRNVDG HFKIYSKFTPVNLNR----GLPTGLSVLQPLVELPVSINITKFRTLLTIHRGD---PMPN NGWTAFSAAYFVGYLKPRTFMLKYNENGTITDAVDCALDPLSETKCTLKSLTVQKGIYQT SNFRVQPTQSVV-RFPNITNVCPFHKVFNAT--RFPSVYAWERTKISDCIADYTVFYNS- TSFSTFKCYGVSPSKLIDLCFTSVYADTFLIRFSEVRQVAPGQTGVIADYNYKLPDDFTG CVIAWNTAKQDV-----G-NYFYRS-----------HRSTKLKPFER------DLSSD-E -----------------NGVRTL-----------STYDFNPNVPLEYQAT-R----VVVL SFELLNAPATVCGPKL-----STQLVKNQCVNFNFNGLKGTGVLTDSSKRFQS-FQQFGK DASDFIDSVRDPQTLEILDITPCSFGGVSVITPGTNTSLEVAVLYQDVNCTDVPTTIHAD QLTPAWRIY---AT--GTNVFQTQAGCLIGAEHV--NASYECDIPIGAGICASYHTAS-- --I-LRSTSQK-----AIVAYT--MSLGAENSIAYANNSIAIPTNFSISVTTEVMPVSMA KTSVDCTMYICGDSIECSNLLLQYGSFCTQLNRALSGIAIEQDKNTQEVFAQVKQIYKTP ---PIKDFGGFNFSQILPDPS----KPSKRSFIEDLLFNKVTLADAGFIKQYGDCLG--- GISARDLICAQKFNGLTVLPPLLTDEMIAAYTAALISGTATAGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQESLTSTASALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYIPSQEKNFTTAPAIC HEG---KAHFPREGVFVSN--G-------THWFVTQRNFYEPKIITTDNTFVSGNCDVVI GIINNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDIDLGDISGINASVVNIQKEI DRLNEVARNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSC LKGCCSCGSCCKFDED-DSEPVLKGVKLHYT--- >ADK66841.1_BtCoV/BM48-31/BGR/2008 ------------MKFLAFL-CLLGFA-----NAQDGKCGTLSNKSPSK-LT-----QTP- ------SSRRGFYYFDDIFRSSIRVLTTGHFLPFNTNLTWYLT----LKSNG----KQR- IYYDNPNINFGDGVYFGLTEK-------------S----NVFRGWIFGSTLDNTTQS--- ------AVLFNN-------------GTHIVIDV-CNFNFCADPM----FAVNSGQPY--- ------KTWI-----YTSAANCTYHRA-HAFNISTN-MNPGKF--KHFRE--HLFKNVDG FLYVYHNYEPIDLNS----GFPSGFSVLKPILKLPFGLNITYVKAIMTLFSS------TQ SNFDADASAYFVGHLKPLTMLVDFDENGTIIDAIDCSQDPLSELKCTTKSFTVEKGIYQT SNFRVTPTTEVV-RFPNITQLCPFNEVFNIT--SFPSVYAWERMRITNCVADYSVLYNSS ASFSTFQCYGVSPTKLNDLCFSSVYADYFVVKGDDVRQIAPAQTGVIADYNYKLPDDFTG CVIAWNTNSLDS--S--N-EFFYRR-----------FRHGKIKPYGR------DLSNVLF NPS----GGTCSA-EGLNCYKPL-----------ASYGFTQSSGIGFQPY-R----VVVL SFELLNAPATVCGPKQ-----STELVKNKCVNFNFNGLTGTGVLTNSTKKFQP-FQQFGR DVSDFTDSVRDPKTLEILDIAPCSYGGVSVITPGTNASSSVAVLYQDVNCTDVPTMLHAD QISHDWRVY---AFRNDGNIFQTQAGCLIGAAYD--NSSYECDIPIGAGICAKYTNVSS- --T-LVRSGGH-----SILAYT--MSLGDNQDIVYSNNTIAIPMNFSISVTTEVLPVSMT KTSVDCNMYICGDSTECSNLLLQYGSFCTQLNRALAGIAVEQDRNTRDVFAQTKAMYKTP ---SLKDFGGFNFSQILPDPA----KPSSRSFIEDLLYNKVTLADPGFMKQYGDCLG--- GVNARDLICAQKFNGLTVLPPLLTDEMIAAYTAALISGTATAGFTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKQIANQFNKAISQIQDSLSTTTTALGKLQDVINQNAIALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQEQNFTTAPAIC HEG---KAHFPREGVFVTN--G-------THWFITQRNFYSPQPITTDNTFVSGNCDVVI GIVNNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSQNVSLDGLNNINASVVDIKKEI EHLNEIAKSLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMATIMLCCMTSCCSC LKGVCSCASCCKFDED-HSEPVLTGVKLHYT--- >APO40579.1_BtKY72 ------------MKFFILL-SLLSFT-----TAQE-GCGILSNKSNPA-LT-----QYF- ------SSRRGFYYFDDTFRSSVRVLTTGYFLPFNSNLTGYSS----RNSVT----GRL- IQFDNPNIPFKDGLYFAATER-------------S----NVIRGWIFGSTLDNTTQS--- ------AVLFNN-------------GTHIVINV-CNFYFCQDPM----LAVANGSHF--- ------KSWV-----FLNATNCTYNRV-HGFEIDPS-PNTGSF--IHLRE--HVFRNVDG FLYVYHNYERVDVYD----NFPQGFSVLKPIFKLPFGLNITQFKVIMTLFSP------TT SSFNADASVYFVGHLKPLTMLAEFDENGTITDAVDCSQDPLSELKCTTKSLTVEKGIYQT SNFRVSPSTEVV-RFPNITNLCPFGQVFNAS--NFPSVYAWERLRISDCVADYAVLYNSS SSFSTFKCYGVSPTKLNDLCFSSVYADYFVVKGDDVRQIAPAQTGVIADYNYKLPDDFTG CVLAWNTNSVDSKSG--N-NFYYRL-----------FRHGKIKPYER------DISNVLY NSA----GGTCSSISQLGCYEPL-----------KSYGFTPTVGVGYQPY-R----VVVL SFELLNAPATVCGPKK-----STELVKNKCVNFNFNGLTGTGVLTSSTKKFQP-FQQFGR DVSDFTDSVRDPKTFEILDISPCSYGGVSVITPGTNTSKAVAVLYQDVNCTDVPTMIHVE QVSSDWRVY---AFNSYGNMFQTQAGCLVGAIYE--NTTYECDIPIGAGICAKFGS---- --D-KIRMGQE-----SIVAYT--MSIGEDQSIAYSNNIIAIPTNFSISVTTEVLPVSMT KTSVDCNMYICGDSTECSNLLLQYGSFCTQLNRALSGIAVEQDRNTRDVFAQTKSIYKTP ---NIKDFGGFNFSQILPDPK----KLSYRSFIEDLLYNKVTLSDPGFMKQYGDCLG--- GINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALISGTATAGYTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKQIANQFNNAISKIQDSLTTTSAALGKLQDVINQNAVALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQQQNFTTAPAIC HNG---KAYFPREGVFVMN--G-------THWFITQRNFYSPQVITTDNTFESGSCDVVI GIINNTVYDPL-Q-PELESFKQELDKYFKNH-----TSPDVDFGDISGINASVVDIKKEI AHLNEIAKNLNESLIDLQELGKYEQYVKWPWYVWLGFVAGIVAILMSVIMLCCMTNCCSC FKGMCSCGSCCKFDED-HSEPV-SGVKLHYT--- >QHR63300.2_RaTG13 -----------------MF-VFLVLL-----PLVSSQCVNLTTRTQLP-PA-----YTN- ------SSTRGVYYPDKVFRSSVLHLTQDLFLPFFSNVTWFHA----IHVSGT---NGI- KRFDNPVLPFNDGVYFASTEK-------------S----NIIRGWIFGTTLDSKTQS--- ------LLIVNN-------------ATNVVIKV-CEFQFCNDPF----LGVYYHKNN--- KSWMESEFRV-----YSSANNCTFEYVSQPFLMDLE-GKQGNF--KNLRE--FVFKNIDG YFKIYSKHTPINLVR----DLPPGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSS SGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQT SNFRVQPTDSIV-RFPNITNLCPFGEVFNAT--TFASVYAWNRKRISNCVADYSVLYNS- TSFSTFKCYGVSPTKLNDLCFTNVYADSFVITGDEVRQIAPGQTGKIADYNYKLPDDFTG CVIAWNSKHIDAKEGGNF-NYLYRL-----------FRKANLKPFER------DISTEIY QAG----SKPCNGQTGLNCYYPL-----------YRYGFYPTDGVGHQPY-R----VVVL SFELLNAPATVCGPKK-----STNLVKNKCVNFNFNGLTGTGVLTESNKKFLP-FQQFGR DIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNASNQVAVLYQDVNCTEVPVAIHAD QLTPTWRVY---ST--GSNVFQTRAGCLIGAEHV--NNSYECDIPIGAGICASYQTQTNS -----RSVASQ-----SIIAYT--MSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMT KTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTP ---PIKDFGGFNFSQILPDPS----KPSKRSFIEDLLFNKVTLADAGFIKQYGDCLG--- DIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQM AYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTL VKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASA NLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAIC HDG---KAHFPREGVFVSN--G-------THWFVTQRNFYEPQIITTDNTFVSGSCDVVI GIVNNTVYDPL-Q-PELDSFKEELDKYFKNH-----TSPDVDLGDISGINASVVNIQKEI DRLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIIMVTIMLCCMTSCCSC LKGCCSCGSCCKFDED-DSEPVLKGVKLHYT--- >YP_009072440.1_Zhejiang2013 MVARY--RLCI-LQLILSA-CHLSITRDVQPYVHEANCTKQVATEGPF-MA-----AYPL ----GKYGFINTYYPDRIFRSNTTALFTDLFPVIGTTVTPWKA----FNALTT---NERK DKRNFERHPFGEGVFVTIKHTQ---------VSGP----STPPMYLFGTYFNSSSYT--- ------LAISLD-------------GLYRRIEV-CNFQVCQNPV----MYYAKVSNP--- ---AQGNPLIYSQRAYTDYNSCVS-QTSQSFNITSQGDKNGAFSKDTITT--YVFKYQNG IFSVFHGFHNGTD----------HVPYPKPAFEFPLDIPITHFIIPPTVEE-----PAQG QGYTRGNYVVYYAQLKKSTFMFGFDSNGLITRYIDCAAGPKDELMCSQGSFNITPGVYTT TNYRATPKQHVVITSADVSAECPFQSLINVTEATIPSPAFWRRHYVRNCNYDISVFTDN- ADVYSLQCYGVAPSSLADMCWEEAHIDYMKISEKDIFSFKPSGAGDFAKYNYKLPSDFMG CTVVFTNQELTCNATSGQLCHVYTNNLTNYPAEATAWDKSHYESIERYQM---WSSENVY NCELQEVGPQQFNRMPRNCYVRS----------NNSNDYW--QPMSFRGV-NSLMVAMAI TLKPTRTSATVCGYKQK----TTPLVLNECITYHIYGYKGTGVIVSANYTFQS-FQTVQL TSTGSLHSFKY--NNTIYGILPCAQAQVSIVTAGSNHD-NVAVVYNGLGCNAFQSKMQGV -DNTEWSVY---TN--FSSPIDTPVGCLTGAIQAQ-ENSTECQFALGLDSCVNYTADTRL R-T-ARAADRALTFNYMYFAQE--LPSQSEQSVAFDNSTLQIPINFTIGIEYETIPVTMP KVTVDCAQYVCGDNSECRTLLVQYGTFCETINDALRGVALQQDVNQKDVFSSVRRLAKVS SPMNLGNLNGFNFSSILNQEAINGNNFQARSAIEDLFFDKIETADVGFQKKYDECTG--- GSVVKDLGCAQSFNGLMVLPPQMTDAHVAAYTTSAA-----------LGSFFSIPNTMQM AYRFNGIAVTQKVLVDNQKQIANKFNQAMMSVQTGFKATSSALEKLQKVVNDNAQALNNL VAQLTNNFGAISSAINDITQRLDKLEADAQIDRLINGRLQVLQTFVTQQLIRASEIRASA KLAAQKMSECVQGQSQRLDFCGRGMHLMSFPQAAPYGMVFLHVLYKPTDYINVTTVPAIC SND---VAYFPVDGVFVYY--N-------NSLMFTKRNYFEPEIITIDNIRSAGSCNVDV TYVNHTIYNPE-M-PELEDFKQELEEIRKNFSTGLPNRPNFTLPGLEGINASMVDLSEEV KILNDVVKELNASLINLQELGVNSQYIKWPWYIWLGFIAGLIAIVMATIMLCCMTSCCSC FKGLCACKRCCDSFDE-PDEPI----KYHYP--- >YP_009273005.1_GCCDC1 ------------MFRTLLLAALFNAC-----WCARPTCIKPTETWGTPSFTGVEYVPHNT TYVSVPLNKLSCLLPDPYMAHSGQTVRQKLYMGNTSNTLVYPVTPPMFNLTYG---NVTP GVYNTSFLPVFDGLLVHTYMNRFA------HLDNPNRTCQEPFGVVFGTTFEQDRIA--- ------MVIIAPGEFGMWGQVNRPNTTFVHVVACSNATICAYPM----FNRWGPAGS--- --IHAENSFV------EHNSSCF---LNDTFEIPMG---------TSRVN--LAFRFQDG NLLLYHTAWLPTENYTLS-----GDYPLRYARSVGVGSNLPFAQFFQSVARA----R--D SACAFLHNNLYIAPVQPKELLVKYNDQGMPVEIADCSADSTQELYCITGTFTPSVGVYQL SRYRAEAKKLVQVTQQEDSCAIPYTTI-----LEPPSPAAWVRATISNCTFDFESLLRT- LPTYNLKCYGISPARLSTMCYAGVTLDIFKLNTTHLSNMLGSVPDAVSIYNYALPSNFYG CVHAYHLNSTTPYAVAVP------------------PGAYPIKPGGRQLFN-SFVSQVLD --------S-----------------------------------PTSQCTPANCMGVVVI GLTPASGSNLVCP-KAN----DTQVIEGQCVKYNFYGYAGTGVINQS-DLAIPNNKLFVT SKSGAVLAVR--AGDKVYSITPCVSVPISV---GYDPGHQRALVFNGLDCSARANAVSMP -ASEYWTAAASTTARGSEPVLDTPSGCVYNVNNCTTHTVSVCEMPIGNSLCLVSNFTCSD VAT-ASLSPNLL----SLVVYD-PT--DAGLKVLTPVYWVSIPTNFTLAATTEYIQTTAP KVNVDCVKYLCGDSERCIDVLSQYGAFCEDVNKALADVSAIIDSSMVTMVSELTAGVMWS -ETPQANVGSYNFSGLMGCLGSNCQEKQYRSAISDLLYNKVKVADPGFMGAYQKCIDEQW GGSVRDLICTQTFNGISVLPPIVSPGMQALYTSLLVGAVASSGYTFGITSVGVIPFATQL QFRLNGLGVTTNVLMENQKLIANAFNNALTGIQKGFDATNMALAKMQSVINQHAQQLSTL VDQLGNSFGAISSSINEIFSRLDELEANAQVDRLINGRMVVLNTYVTQLLIRASEVKAQA ALASQKISECVKAQSQRNDFCGNGTHVLSIPQMAPNGVLFLHYSYQPTAYNLVRTAAGLC FND---TGYAPLGGLFVLPNNT-------DRWLFTKMSFYDPVNISVSNTQVLAACGLNY SSVNYTVLEPAVD-TSSFNFTEEFEKWYVNQSHIFNNT-----FNASAFNFSLVDVNEQL AILTDVVNQLNQSYIDLKQLGTYEYTVKWPWYVWLGMIAGLVGLVLAVVLLLCMTNCCSC ARGVCSCKSCAYEEHE-DVYPA---VRVHGKRTA >AVP25406.1_HKU9 ------------MFLIF---LLLSQV-----NADRPSCFSSPDLTTTK--------QHII SNVSFYVQVKNLLLPDPYIAYSGQVLKQHLPTADLSNVIKYPITPDLVDATKG---Y--- -VFNTTILPVDLGVFVHTWMYRQP--------SSSNLYCQQPFGVAFGNTFVEDRIA--- ------VIVIAPDNLGSWVHSSPRDQTTVHILVCSNATLCANPG----FNRWGPAGN--- --ILVRNPLV------EHDNSCF---VNNSFNIPLS---------TARLN--LAFLFKDG NLLVYHSPWLPHGDFNVN-----GTYPLTYFMTLPVGSNLRHAQYFQSVVRNDYAVA--D GKCRDFDLNLYIAPIVYKELLVQYSINGSVENAAECANSASDELYCVTGTFEPQTGVYAL SRYRAQVQGFVRITQQADVCQPPYAAL-----ENPPQPVVWRRYLVRDCAFDFATVINN- LPTYQLHCYGVSPSRLASMCYNTITIDVMRINTTHLNNLLQKVPDAFSLYNYAIPSDFYG CIHAYYLNVTDTYAIATQ---------------------RRISPGGRQDDS-FYINTVLG --------A-----------------------------------AQYSGFNTLLYGLSVI SLTPASGNKLVCP-IAN----DTAVVTNQCVQYNLYGYTGTGVLNATTAISIPSDKVFSA SDTGDIVAVR--VNGTVYTIRPCVSVPISV---GYHAGYERALLFNGLSCADRTSAITMP -ASTYWSTARAQS---ASNYYDTISGCVYNVDYNNATTVNQCVMPLGNSLCLVPNTQRV- -------AGSRL----TLVNFD-PMYVSDSVTSLTPIYWVNIPTNFTLAATEEFIQTTAP KMNIDCARYLCGDSSRCLTVSLQYGTFCDDINKALLRVSQLLDTSLLALFKEFSTNVR-P -EAELSLDGAYNFTGLMGCLGSNCGGKSHRSALSELLYNKVKVADPGFMSSYQKCIDSQW GGEVRDLICTQTYNGISVLPPIVAPGMQALYTSLLVGAVASSGYTFGITSVGVIPFATQL QFRLNGIGVTTQVLVENQKLIASSFNKALTSIQEGFTATNQALAKMQAVINQHASQLQTL VIQLGNSFGAISSSLNEIFSRLEGLAADAEVDRLINGRMVVLNTYVTQLLIQASELRAQN QLAVQKISECVKAQSSRNDFCGNGTHVLSIPQLAPNGVLFIHYTYRPTEYAYVQTSAGLC YNK---TGYAPKGGMFVLPNNT-------NLWHFTAMNFYNPVNITVFNTQILTSCSLNF TAVNYTVLEPL-Q-YSDFDFDAQFEKFYKNISSHFNNT-----FDPNQFNFSTVDVKEQL DTLTNVVKQLNESVIDLKQMNVYEQTIKWPWYVWLAMIAGIVGLVLAVVMLLCMTNCCSC FKGMCSCKQCYYDELD-DVYPA---VRVHNKRTA >AGP04939.1_HKU5 MIRSLLVLMCSLTF---IENLTRGQIVDMGPN-GTGSCLDSQVQPDYFESV-----RTTW PMPIDTSKAEGVIYPNGKSYSNISLTYTGLYPKANDLGKQYLFSDGHSA--PGKLNNLFV SNYSSQVESFDDGFVVRIGAAANKTGTTVISQSTFKPIKKIYPAFLLGHSVGNYTPSNRS GRYFNHTLVILPDGCGTILHAF-----Y-CILIPRTQQNCAGDMNFKSLSLWDTPASDCN PGSYNEQATLGAFKVYFDLINCTFRY---NYTITED-ENAEWFGITQDTQGVHLYSSRKE NV--FR-------------------NNMFHFATLPVYQKILYYTVIPRSIRS-------P FNDRKAWAAFYIYKLHPLTYLLNFDVEGYITKAVDCGYDDFAQLQCSYENFDVETGVYSV SSFEASPRGEFI--EQSVTKECDFSPMLTG---TPPPIYDFKRLVFTNCNYNLTKLLSL- FQVSEFSCHQVSPSSLATGCYSSLTVDYFAYSTDMSSYLQPGSAGEIVQFNYKQDFSNPT CRVLATVPTNL-TTITKPSNYVHLTEC------------YKSTAYG---KNYLFNAPGGY --------TPCLSLASS-GFSRDRQSHSQE---LPDGSFLTTTGSVYSVG-SNLQMAFII SVQYGTDTNSVCPMQALRNDTSIEDKLDVCVEYSLHGITGRGVFHNCTSVGLR-NQRFVY DTFDNLVGYH-SDNGNYYCVRPCVSVPVSVIYDKVS--NSHATLFGSVACSHVTTMMSQL SRMTKTNLLA---RT-TPGPLQTTVGCAMGFINSS-MIVDECQLPLGQSLCAIPPTTSTR FRRATSGVSDV--FQIATLNFTSPLTLA---PINSTGFVVAVPTNFTFGVTQEFIETTIQ KITVDCKQYVCNGFKKCEDLLKEYGQFCSKINQALHGANLRQDESIANLFSSIKTQNTQP --LQAGLNGDFNLT-MLQIPQVTTGERKYRSAIEDLLFNKVTIADPGYMQGYDECMQ-QG PQSARDLICAQYVAGYKVLPPLYDPYMEAAYTSSLLGSIAGASWTAGLSSFAAIPFAQSI FYRLNGVGITQQVLSENQKIIANKFNQALGAMQTGFTTTNLAFSKVQDAVNANAMALSKL AAELSNTFGAISSSISDILARLDTVEQEAQIDRLINGRLTSLNAFVAQQLVRTEAAARSA QLAQDKVNECVKSQSKRNGFCGTGTHIVSFAINAPNGLYFFHVGYQPTSHVNATAAYGLC NTENPPKCIAPIDGYFVLNQTISTVANSDQHWYYTGSSFFHPEPITEANSKYVS-MDVKF ENLTNRLPPPLLSNSTDMDFKEELEEFFKNVSSQGPNF-----QEISKINTTLLNLNTEL MVLSEVVKQLNESYIDLKELGNYTFYQKWPWYIWLGFIAGLVALALCVFFILCCTGCGTS CLGKLKCNRCCDSYDEYEVEKI----HVH----- >AGP04928.1_HKU4 ----MTLLMCLLMSLLIFVRGCDSQFVDMSPASNTSECLESQVDAAAFS-------KLMW PYPIDPSKVDGIIYPLGRTYSNITLAYTGLFPLQGDLGSQYLYSVSHAVGHDGDPTKAYI SNYSLLVNDFDNGFVVRIGAAANSTGTIVISPSVNTKIKKAYPAFILGSSLTNTSA--GQ PLYANYSLTIIPDGCGTVLHAF-----Y-CILKPRTGNRCPSGTGYVSYFIYETLHNDCQ S-TINRNASLNSFKSFFDLVNCTFFN---SWDITAD-ETKEWFGITQDTQGVHLYSSRKG DL--YG-------------------GNMFRFATLPVYDGIKYYTVIPRSFRS-------K ANKREAWAAFYVYKLHQLTYLLDFSVDGYIRRAIDCGHDDLSQLHCSYTSFEVDTGVYSV SSYEASATGTFI--EQPNATECDFSPMLTG---VAPQVYNFKRLVFSNCNYNLTKLLSL- FAVDEFSCNGISPDAIARGCYSTLTVDYFAYPLSMKSYIRPGSAGNIPLYNYKQSFANPT CRVMASVPANV-T-ITKPDAYGYISKC------------SRLTGANQDVETPLYINPGEY --------SICRDFSPG-GFSEDGQVFKRTLTQFEGGGLLIGVGTRVPMT-DNLQMSFII FVQYGTGTDSVCPMLDLGDSLTITNRLGKCVDYSLYGVTGRGVFQNCSAVGVK-QQRFVY DSFDNLVGYY-SDDGNYYCVRPCVSVPVSVIYDKST--NLHATLFGSVACEHVTTMMSQF SRLTQSNLRR---RD-SNIPLQTAVGCVIGLSNNS-LVVSDCKLPLGQSLCAVPPVSTFR SY-----SASQ--FQLAVLNYTSPIVVT---PINSSGFTAAIPTNFSFSVTQEYIETSIQ KVTVDCKQYVCNGFTRCEKLLVEYGQFCSKINQALHGANLRQDESVYSLYSNIKTTSTQT --LDYGLNGDFNLT-LLQVPQIGGSSSSYRSAIEDLLFDKVTIADPGYMQGYDDCMK-QG PQSARDLICAQYVSGYKVLPPLYDPNMEAAYTSSLLGSIAGAGWTAGLSSFAAIPFAQSM FYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTSNLAFSKVQDAVNANAQALSKL ASELSNTFGAISSSISDILARLDTVEQDAQIDRLINGRLTSLNAFVSQQLVRSETAARSA QLASDKVNECVKSQSKRNGFCGSGTHIVSFVVNAPNGFYFFHVGYVPTNYTNVTAAYGLC NNNNPPLCIAPIDGYFITNQTTT--YSVDTEWYYTGSSFYKPEPITQANSRYVS-SDVKF EKLENNLPPPLLENSTDVDFKDELEEFFKNVTSHGPNF-----AEISKINTTLLDLSDEM AILQEVVKQLNDSYIDLKELGNYTYYNKWPWYVWLGFIAGLVALLLCVFFLLCCTGCGTS CLGKMKCKNCCDSYEEYDVEKI----HVH----- >YP_009047204.1_MERS-CoV MIH--------SVFLLMFLLTPTESYVDVGPDSVKSACIEVDIQQTFFD--------KTW PRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGT--TPQKLFV ANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDG-KM GRFFNHTLVLLPDGCGTLLRAF-----Y-CILEPRSGNHCPAGNSYTSFATYHTPATDCS DGNYNRNASLNSFKEYFNLRNCTFMY---TYNITED-EILEWFGITQTAQGVHLFSSRYV DL--YG-------------------GNMFQFATLPVYDTIKYYSIIPHSIRS-------I QSDRKAWAAFYVYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSV SSFEAKPSGSVV--EQAEGVECDFSPLLSG---TPPQVYNFKRLVFTNCNYNLTKLLSL- FSVNDFTCSQISPAAIASNCYSSLILDYFSYPLSMKSDLSVSSAGPISQFNYKQSFSNPT CLILATVPHNL-TTITKPLKYSYINKC------------SRLLSDDR-TEVPQLVNANQY --------SPCVSIVPS-TVWEDGDYYRKQLSPLEGGGWLVASGSTVAMT-EQLQMGFGI TVQYGTDTNSVCPKLEFANDTKIASQLGNCVEYSLYGVSGRGVFQNCTAVGVR-QQRFVY DAYQNLVGYY-SDDGNYYCLRACVSVPVSVIYDKET--KTHATLFGSVACEHISSTMSQY SRSTRSMLKR---RDSTYGPLQTPVGCVLGLVNSS-LFVEDCKLPLGQSLCALPDTPSTL TPRSVRSVPGE--MRLASIAFNHPIQVD---QLNSSYFKLSIPTNFSFGVTQEYIQTTIQ KVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSP --IIPGFGGDFNLT-LLEPVSISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQ-QG PASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSI FYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNAQALSKL ASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSA QLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLC DAANPTNCIAPVNGYFIKTNNTR----IVDEWSYTGSSFYAPEPITSLNTKYVA-PQVTY QNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNF-----GSLTQINTTLLDLTYEM LSLQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGLVALALCVFFILCCTGCGTN CMGKLKCNRCCDRYEEYDLEPH----KVHVH---